Dunn PK, Smyth GK (1996). Randomized quantile residuals. J. Comput. Graph. Statist., 5, 236-244. (qresid functions)

Giner G, Smyth GK (2016). statmod: probability calculations for the inverse Gaussian distribution. R Journal 8(1), 339-351. (pinvgauss, qinvgauss, dinvguass and rinvgauss functions)

Hu Y, Smyth GK (2009). ELDA: Extreme limiting dilution analysis for comparing depleted and enriched populations in stem cell and other assays. Journal of Immunological Methods 347, 70-78. (elda and limdil functions)

Phipson B, Smyth GK (2010). Permutation p-values should never be zero: calculating exact p-values when permutations are randomly drawn. Statistical Applications in Genetics and Molecular Biology, Volume 9, Issue 1, Article 39. (permp function)

Smyth GK (1998). Numerical integration. In: Encyclopedia of Biostatistics, P. Armitage and T. Colton (eds.), Wiley, London, pp. 3088-3095. (gauss.quad and gauss.quad.prob functions)

Smyth GK (1998). Optimization and nonlinear equations. In: Encyclopedia of Biostatistics, P. Armitage and T. Colton (eds.), Wiley, London, pp. 3174-3180. (glmgam.fit, glmnb.fit and fitNBP functions)

Smyth GK (2002). An efficient algorithm for REML in heteroscedastic regression. Journal of Computational and Graphical Statistics 11, 836-847. (remlscore, randomizedBlock, and mixedModel2 functions)

Corresponding BibTeX entries:

  @Article{,
    author = {Peter K Dunn and Gordon K Smyth},
    year = {1996},
    title = {Randomized quantile residuals},
    journal = {J. Comput. Graph. Statist},
    volume = {5},
    pages = {236-244},
  }

  @Article{,
    author = {Goknur Giner and Gordon K Smyth},
    year = {2016},
    title = {statmod: probability calculations for the inverse Gaussian
      distribution},
    journal = {R Journal},
    volume = {8},
    number = {1},
    pages = {339-351},
  }

  @Article{,
    author = {Yifang Hu and Gordon K Smyth},
    year = {2009},
    title = {ELDA: extreme limiting dilution analysis for comparing
      depleted and enriched populations in stem cell and other assays},
    journal = {Journal of Immunological Methods},
    volume = {347},
    number = {1},
    pages = {70-78},
  }

  @Article{,
    author = {Belinda Phipson and Gordon K Smyth},
    year = {2010},
    title = {Permutation p-values should never be zero: calculating
      exact p-values when permutations are randomly drawn},
    journal = {Statistical Applications in Genetics and Molecular
      Biology},
    volume = {9},
    number = {1},
    pages = {Article 39},
  }

  @Article{,
    author = {Gordon K Smyth},
    title = {Numerical integration},
    journal = {Encyclopedia of Biostatistics},
    year = {2005},
    publisher = {John Wiley and Sons, Ltd},
    pages = {3088-3095},
  }

  @Article{,
    author = {Gordon K Smyth},
    title = {Optimization and nonlinear equations},
    journal = {Encyclopedia of Biostatistics},
    year = {2005},
    publisher = {John Wiley and Sons},
    pages = {3088-3095},
  }

  @Article{,
    author = {Gordon K Smyth},
    year = {2002},
    title = {An efficient algorithm for REML in heteroscedastic
      regression},
    journal = {Journal of Computational and Graphical Statistics},
    volume = {11},
    pages = {836-847},
  }