limma - Linear Models for Microarray and Omics Data

Data analysis, linear models and differential expression for omics data.

Last updated 13 days ago

exonarraygeneexpressiontranscriptionalternativesplicingdifferentialexpressiondifferentialsplicinggenesetenrichmentdataimportbayesianclusteringregressiontimecoursemicroarraymicrornaarraymrnamicroarrayonechannelproprietaryplatformstwochannelsequencingrnaseqbatcheffectmultiplecomparisonnormalizationpreprocessingqualitycontrolbiomedicalinformaticscellbiologycheminformaticsepigeneticsfunctionalgenomicsgeneticsimmunooncologymetabolomicsproteomicssystemsbiologytranscriptomics

13.78 score 584 packages 15k scripts 60k downloads

statmod - Statistical Modeling

A collection of algorithms and functions to aid statistical modeling. Includes limiting dilution analysis (aka ELDA), growth curve comparisons, mixed linear models, heteroscedastic regression, inverse-Gaussian probability calculations, Gauss quadrature and a secure convergence algorithm for nonlinear models. Also includes advanced generalized linear model functions including Tweedie and Digamma distributional families, secure convergence and exact distributional calculations for unit deviances.

Last updated 2 years ago

9.55 score 1 stars 838 packages 2.0k scripts 71k downloads

limmaGUI - GUI for limma Package With Two Color Microarrays

A Graphical User Interface for differential expression analysis of two-color microarray data using the limma package.

Last updated 25 days ago

guigeneexpressiondifferentialexpressiondataimportbayesianregressiontimecoursemicroarraymrnamicroarraytwochannelbatcheffectmultiplecomparisonnormalizationpreprocessingqualitycontrol

4.60 score 1 scripts 297 downloads

dglm - Double Generalized Linear Models

Model fitting and evaluation tools for double generalized linear models (DGLMs). This class of models uses one generalized linear model (GLM) to fit the specified response and a second GLM to fit the deviance of the first model.

Last updated 12 months ago

3.61 score 2 stars 1 packages 68 scripts 427 downloads

affylmGUI - GUI for limma Package with Affymetrix Microarrays

A Graphical User Interface (GUI) for analysis of Affymetrix microarray gene expression data using the affy and limma packages.

Last updated 25 days ago

guigeneexpressiontranscriptiondifferentialexpressiondataimportbayesianregressiontimecoursemicroarraymrnamicroarrayonechannelproprietaryplatformsbatcheffectmultiplecomparisonnormalizationpreprocessingqualitycontrol

3.60 score 3 scripts 442 downloads